AdapterRemoval

rapid adapter trimming, identification, and read merging of gene sequences

Install

All systems
curl cmd.cat/AdapterRemoval.sh
Debian Debian
apt-get install adapterremoval
Ubuntu
apt-get install adapterremoval
image/svg+xml Kali Linux
apt-get install adapterremoval
Windows (WSL2)
sudo apt-get update sudo apt-get install adapterremoval
Raspbian
apt-get install adapterremoval

adapterremoval

rapid adapter trimming, identification, and read merging of gene sequences

This program searches for and removes remnant adapter sequences from High- Throughput Sequencing (HTS) data and (optionally) trims low quality bases from the 3' end of reads following adapter removal. AdapterRemoval can analyze both single end and paired end data, and can be used to merge overlapping paired-ended reads into (longer) consensus sequences. Additionally, the AdapterRemoval may be used to recover a consensus adapter sequence for paired-ended data, for which this information is not available.