AlignRecords.py

Repertoire clonal assignment toolkit (Python 3)

Install

All systems
curl cmd.cat/AlignRecords.py.sh
Debian Debian
apt-get install changeo
Ubuntu
apt-get install changeo
image/svg+xml Kali Linux
apt-get install changeo
Windows (WSL2)
sudo apt-get update sudo apt-get install changeo
Dockerfile
dockerfile.run/AlignRecords.py

changeo

Repertoire clonal assignment toolkit (Python 3)

Change-O is a collection of tools for processing the output of V(D)J alignment tools, assigning clonal clusters to immunoglobulin (Ig) sequences, and reconstructing germline sequences. Dramatic improvements in high-throughput sequencing technologies now enable large-scale characterization of Ig repertoires, defined as the collection of trans-membrane antigen-receptor proteins located on the surface of B cells and T cells. Change-O is a suite of utilities to facilitate advanced analysis of Ig and TCR sequences following germline segment assignment. Change-O handles output from IMGT/HighV-QUEST and IgBLAST, and provides a wide variety of clustering methods for assigning clonal groups to Ig sequences. Record sorting, grouping, and various database manipulation operations are also included. This package installs the library for Python 3.