ChromImpute

Large-scale systematic epigenome imputation

Install

All systems
curl cmd.cat/ChromImpute.sh
Debian Debian
apt-get install chromimpute
Ubuntu
apt-get install chromimpute
image/svg+xml Kali Linux
apt-get install chromimpute
Windows (WSL2)
sudo apt-get update sudo apt-get install chromimpute
Dockerfile
dockerfile.run/ChromImpute

chromimpute

Large-scale systematic epigenome imputation

ChromImpute takes an existing compendium of epigenomic data and uses it to predict signal tracks for mark-sample combinations not experimentally mapped or to generate a potentially more robust version of data sets that have been mapped experimentally. ChromImpute bases its predictions on features from signal tracks of other marks that have been mapped in the target sample and the target mark in other samples with these features combined using an ensemble of regression trees.