ClonalFrame
inference of bacterial microevolution using multilocus sequence data
Install
- All systems
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curl cmd.cat/ClonalFrame.sh
- Debian
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apt-get install clonalframe - Ubuntu
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apt-get install clonalframe - Kali Linux
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apt-get install clonalframe - Windows (WSL2)
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sudo apt-get updatesudo apt-get install clonalframe - Raspbian
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apt-get install clonalframe - Dockerfile
- dockerfile.run/ClonalFrame
clonalframe
inference of bacterial microevolution using multilocus sequence data
ClonalFrame identifies the clonal relationships between the members of a sample, while also estimating the chromosomal position of homologous recombination events that have disrupted the clonal inheritance. ClonalFrame can be applied to any kind of sequence data, from a single fragment of DNA to whole genomes. It is well suited for the analysis of MLST data, where 7 gene fragments have been sequenced, but becomes progressively more powerful as the sequenced regions increase in length and number up to whole genomes. However, it requires the sequences to be aligned. If you have genomic data that is not aligned, it is recommend to use Mauve which produces alignment of whole bacterial genomes in exactly the format required for analysis with ClonalFrame.