DASedit
alignment-based scrubbing pipeline for DNA sequencing reads
Install
- All systems
-
curl cmd.cat/DASedit.sh
- Debian
-
apt-get install dascrubber
- Ubuntu
-
apt-get install dascrubber
- Kali Linux
-
apt-get install dascrubber
- Windows (WSL2)
-
sudo apt-get update
sudo apt-get install dascrubber
- Raspbian
-
apt-get install dascrubber
- Dockerfile
- dockerfile.run/DASedit
dascrubber
alignment-based scrubbing pipeline for DNA sequencing reads
The Dazzler Scrubbing Suite produces a set of edited reads that are guaranteed to * be continuous stretches of the underlying genome (i.e. no unremoved adapters and not chimers) * have no very low quality stretches (i.e. the error rate never exceeds some reasonable maximum, 20% or so in the case of Pacbio data). Its secondary goal is to do so with the minimum removal of data and splitting of reads.