DASmap
alignment-based scrubbing pipeline for DNA sequencing reads
Install
- All systems
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curl cmd.cat/DASmap.sh
- Debian
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apt-get install dascrubber - Ubuntu
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apt-get install dascrubber - Kali Linux
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apt-get install dascrubber - Windows (WSL2)
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sudo apt-get updatesudo apt-get install dascrubber - Raspbian
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apt-get install dascrubber - Dockerfile
- dockerfile.run/DASmap
dascrubber
alignment-based scrubbing pipeline for DNA sequencing reads
The Dazzler Scrubbing Suite produces a set of edited reads that are guaranteed to * be continuous stretches of the underlying genome (i.e. no unremoved adapters and not chimers) * have no very low quality stretches (i.e. the error rate never exceeds some reasonable maximum, 20% or so in the case of Pacbio data). Its secondary goal is to do so with the minimum removal of data and splitting of reads.