DASqv

alignment-based scrubbing pipeline for DNA sequencing reads

Install

All systems
curl cmd.cat/DASqv.sh
Debian Debian
apt-get install dascrubber
Ubuntu
apt-get install dascrubber
image/svg+xml Kali Linux
apt-get install dascrubber
Windows (WSL2)
sudo apt-get update sudo apt-get install dascrubber
Raspbian
apt-get install dascrubber

dascrubber

alignment-based scrubbing pipeline for DNA sequencing reads

The Dazzler Scrubbing Suite produces a set of edited reads that are guaranteed to * be continuous stretches of the underlying genome (i.e. no unremoved adapters and not chimers) * have no very low quality stretches (i.e. the error rate never exceeds some reasonable maximum, 20% or so in the case of Pacbio data). Its secondary goal is to do so with the minimum removal of data and splitting of reads.