ExtendOrFormatContigs.pl
scaffolding pre-assembled contigs after extension
Install
- All systems
-
curl cmd.cat/ExtendOrFormatContigs.pl.sh
- Debian
-
apt-get install sspace
- Ubuntu
-
apt-get install sspace
- Kali Linux
-
apt-get install sspace
- Windows (WSL2)
-
sudo apt-get update
sudo apt-get install sspace
- Raspbian
-
apt-get install sspace
- Dockerfile
- dockerfile.run/ExtendOrFormatContigs.pl
sspace
scaffolding pre-assembled contigs after extension
SSAKE-based Scaffolding of Pre-Assembled Contigs after Extension (SSPACE) is a script able to extend and scaffold pre-assembled contigs using one or more mate pairs or paired-end libraries, or even a combination. SSPACE is built based on SSAKE. Code of SSAKE is changed to be able to extend and scaffold pre-assembled contigs for multiple paired reads libraries. This is the free 'basic' version of SSPACE. The non-free 'standard' version is available directly from Baseclear.