GWAMA

Genome-Wide Association Meta Analysis

Install

All systems
curl cmd.cat/GWAMA.sh
Debian Debian
apt-get install gwama
Ubuntu
apt-get install gwama
image/svg+xml Kali Linux
apt-get install gwama
Windows (WSL2)
sudo apt-get update sudo apt-get install gwama
Raspbian
apt-get install gwama

gwama

Genome-Wide Association Meta Analysis

GWAMA (Genome-Wide Association Meta Analysis) software performs meta-analysis of the results of GWA studies of binary or quantitative phenotypes. Fixed- and random-effect meta-analyses are performed for both directly genotyped and imputed SNPs using estimates of the allelic odds ratio and 95% confidence interval for binary traits, and estimates of the allelic effect size and standard error for quantitative phenotypes. GWAMA can be used for analysing the results of all different genetic models (multiplicative, additive, dominant, recessive). The software incorporates error trapping facilities to identify strand alignment errors and allele flipping, and performs tests of heterogeneity of effects between studies.