HPCdaligner
local alignment discovery between long nucleotide sequencing reads
Install
- All systems
-
curl cmd.cat/HPCdaligner.sh
- Debian
-
apt-get install daligner
- Ubuntu
-
apt-get install daligner
- Kali Linux
-
apt-get install daligner
- Windows (WSL2)
-
sudo apt-get update
sudo apt-get install daligner
- Raspbian
-
apt-get install daligner
- Dockerfile
- dockerfile.run/HPCdaligner
daligner
local alignment discovery between long nucleotide sequencing reads
These tools permit one to find all significant local alignments between reads encoded in a Dazzler database. The assumption is that the reads are from a Pacific Biosciences RS II long read sequencer. That is, the reads are long and noisy, up to 15% on average.