Honey

genomic structural variation discovery

Install

All systems
curl cmd.cat/Honey.sh
Debian Debian
apt-get install pbhoney
Ubuntu
apt-get install pbhoney
Windows (WSL2)
sudo apt-get update sudo apt-get install pbhoney
Raspbian
apt-get install pbhoney

pbhoney

genomic structural variation discovery

PBHoney is an implementation of two variant-identification approaches designed to exploit the high mappability of long reads (i.e., greater than 10,000 bp). PBHoney considers both intra-read discordance and soft-clipped tails of long reads to identify structural variants. PBHoney is part of the PBSuite.