Jelly.py
genome assembly upgrading tool
Install
- All systems
-
curl cmd.cat/Jelly.py.sh
- Debian
-
apt-get install pbjelly - Ubuntu
-
apt-get install pbjelly - Windows (WSL2)
-
sudo apt-get updatesudo apt-get install pbjelly - Raspbian
-
apt-get install pbjelly - Dockerfile
- dockerfile.run/Jelly.py
pbjelly
genome assembly upgrading tool
PBJelly is a highly automated pipeline that aligns long sequencing reads (such as PacBio RS reads or long 454 reads in fasta format) to high-confidence draft assembles. PBJelly fills or reduces as many captured gaps as possible to produce upgraded draft genomes. PBJelly is part of the PBSuite.