LAcat
local alignment discovery between long nucleotide sequencing reads
Install
- All systems
-
curl cmd.cat/LAcat.sh
- Debian
-
apt-get install daligner - Ubuntu
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apt-get install daligner - Kali Linux
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apt-get install daligner - Windows (WSL2)
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sudo apt-get updatesudo apt-get install daligner - Raspbian
-
apt-get install daligner - Dockerfile
- dockerfile.run/LAcat
daligner
local alignment discovery between long nucleotide sequencing reads
These tools permit one to find all significant local alignments between reads encoded in a Dazzler database. The assumption is that the reads are from a Pacific Biosciences RS II long read sequencer. That is, the reads are long and noisy, up to 15% on average.