PairingAndScaffolding.pl
scaffolding pre-assembled contigs after extension
Install
- All systems
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curl cmd.cat/PairingAndScaffolding.pl.sh
- Debian
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apt-get install sspace - Ubuntu
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apt-get install sspace - Kali Linux
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apt-get install sspace - Windows (WSL2)
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sudo apt-get updatesudo apt-get install sspace - Raspbian
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apt-get install sspace - Dockerfile
- dockerfile.run/PairingAndScaffolding.pl
sspace
scaffolding pre-assembled contigs after extension
SSAKE-based Scaffolding of Pre-Assembled Contigs after Extension (SSPACE) is a script able to extend and scaffold pre-assembled contigs using one or more mate pairs or paired-end libraries, or even a combination. SSPACE is built based on SSAKE. Code of SSAKE is changed to be able to extend and scaffold pre-assembled contigs for multiple paired reads libraries. This is the free 'basic' version of SSPACE. The non-free 'standard' version is available directly from Baseclear.