SplitClusterEven
removal of noise from 454 sequenced PCR amplicons
Install
- All systems
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curl cmd.cat/SplitClusterEven.sh
- Debian
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apt-get install ampliconnoise - Ubuntu
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apt-get install ampliconnoise - Kali Linux
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apt-get install ampliconnoise - Windows (WSL2)
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sudo apt-get updatesudo apt-get install ampliconnoise - Raspbian
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apt-get install ampliconnoise - Dockerfile
- dockerfile.run/SplitClusterEven
ampliconnoise
removal of noise from 454 sequenced PCR amplicons
AmpliconNoise is a package of applications to clean up high-throughput sequence data. It consists of three main parts: Pyronoise - does flowgram-based clustering to spot misreads SeqNoise - removes PCR point mutations Perseus - removes PCR chimeras without the need for a set of reference sequences Previously there was a standalone "Pyronoise" by the same authors and this package includes an updated version. There is also a "Denoiser" in Qiime which is related but distinct.