abyss-fixmate
de novo, parallel, sequence assembler for short reads
Install
- All systems
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curl cmd.cat/abyss-fixmate.sh
- Debian
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apt-get install abyss - Ubuntu
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apt-get install abyss - Kali Linux
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apt-get install abyss - Windows (WSL2)
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sudo apt-get updatesudo apt-get install abyss - OS X
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brew install abyss - Raspbian
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apt-get install abyss - Dockerfile
- dockerfile.run/abyss-fixmate
abyss
de novo, parallel, sequence assembler for short reads
ABySS is a de novo, parallel, sequence assembler that is designed for short reads. It may be used to assemble genome or transcriptome sequence data. Parallelization is achieved using MPI, OpenMP and pthread.