airr-tools

Data Representation Standard library for antibody and TCR sequences

Install

All systems
curl cmd.cat/airr-tools.sh
Debian Debian
apt-get install python3-airr
Ubuntu
apt-get install python3-airr
image/svg+xml Kali Linux
apt-get install python3-airr
Windows (WSL2)
sudo apt-get update sudo apt-get install python3-airr
Dockerfile
dockerfile.run/airr-tools

python3-airr

Data Representation Standard library for antibody and TCR sequences

This package provides a library by the AIRR community to for describing, reporting, storing, and sharing adaptive immune receptor repertoire (AIRR) data, such as sequences of antibodies and T cell receptors (TCRs). Some specific efforts include: * The MiAIRR standard for describing minimal information about AIRR datasets, including sample collection and data processing information. * Data representations (file format) specifications for storing large amounts of annotated AIRR data. * APIs for exposing a common interface to repositories/databases containing AIRR data. * A community standard for software tools which will allow conforming tools to gain community recognition. This package installs the library for Python 3.