anfo

Short Read Aligner/Mapper from MPG

Install

All systems
curl cmd.cat/anfo.sh
Debian Debian
apt-get install anfo
Ubuntu
apt-get install anfo
image/svg+xml Kali Linux
apt-get install anfo
Raspbian
apt-get install anfo

anfo

Short Read Aligner/Mapper from MPG

Anfo is a mapper in the spirit of Soap/Maq/Bowtie, but its implementation takes more after BLAST/BLAT. It's most useful for the alignment of sequencing reads where the DNA sequence is somehow modified (think ancient DNA or bisulphite treatment) and/or there is more divergence between sample and reference than what fast mappers will handle gracefully (say the reference genome is missing and a related species is used instead).