arden-analyze

specificity control for read alignments using an artificial reference

Install

All systems
curl cmd.cat/arden-analyze.sh
Debian Debian
apt-get install arden
Ubuntu
apt-get install arden
image/svg+xml Kali Linux
apt-get install arden
Windows (WSL2)
sudo apt-get update sudo apt-get install arden
Raspbian
apt-get install arden
Dockerfile
dockerfile.run/arden-analyze

arden

specificity control for read alignments using an artificial reference

ARDEN (Artificial Reference Driven Estimation of false positives in NGS data) is a novel benchmark that estimates error rates based on real experimental reads and an additionally generated artificial reference genome. It allows the computation of error rates specifically for a dataset and the construction of a ROC-curve. Thereby, it can be used to optimize parameters for read mappers, to select read mappers for a specific problem or also to filter alignments based on quality estimation.