ariba
Antibiotic Resistance Identification By Assembly
Install
- All systems
-
curl cmd.cat/ariba.sh
- Debian
-
apt-get install ariba - Ubuntu
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apt-get install ariba - Kali Linux
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apt-get install ariba - Windows (WSL2)
-
sudo apt-get updatesudo apt-get install ariba - Dockerfile
- dockerfile.run/ariba
ariba
Antibiotic Resistance Identification By Assembly
ARIBA is a tool that identifies antibiotic resistance genes by running local assemblies. The input is a FASTA file of reference genes and paired sequencing reads. ARIBA reports which of the reference genes were found, plus detailed information on the quality of the assemblies and any variants between the sequencing reads and the reference genes.