bali-phy-pkg
Bayesian Inference of Alignment and Phylogeny
Install
- All systems
-
curl cmd.cat/bali-phy-pkg.sh
- Debian
-
apt-get install bali-phy
- Ubuntu
-
apt-get install bali-phy
- Kali Linux
-
apt-get install bali-phy
- Windows (WSL2)
-
sudo apt-get update
sudo apt-get install bali-phy
- Dockerfile
- dockerfile.run/bali-phy-pkg
bali-phy
Bayesian Inference of Alignment and Phylogeny
BAli-Phy estimates multiple sequence alignments and evolutionary trees from unaligned DNA, amino acid, or codon sequences. BAli-Phy uses MCMC to estimate evolutionary trees, positive selection, and branch lengths while averaging over alternative alignments. BAli-Phy can display alignment ambiguity graphically in an alignment uncertainty (AU) plot. BAli-Phy can also estimate phylogenies from a fixed alignment (like MrBayes and BEAST) using substitution models like GTR+gamma. BAli-Phy automatically estimates relative rates for each gene.