bamToGBrowse.pl
Perl interface to SamTools library for DNA sequencing
Install
- All systems
-
curl cmd.cat/bamToGBrowse.pl.sh
- Debian
-
apt-get install libbio-samtools-perl - Ubuntu
-
apt-get install libbio-samtools-perl - Kali Linux
-
apt-get install libbio-samtools-perl - Windows (WSL2)
-
sudo apt-get updatesudo apt-get install libbio-samtools-perl - Raspbian
-
apt-get install libbio-samtools-perl - Dockerfile
- dockerfile.run/bamToGBrowse.pl
libbio-samtools-perl
Perl interface to SamTools library for DNA sequencing
Bio::SamTools provides a Perl interface to the libbam library for indexed and unindexed SAM/BAM sequence alignment databases. It provides support for retrieving information on individual alignments, read pairs, and alignment coverage information across large regions. It also provides callback functionality for calling SNPs and performing other base-by-base functions. Most operations are compatible with the BioPerl Bio::SeqFeatureI interface, allowing BAM files to be used as a backend to the GBrowse genome browser application.