barrnap

rapid ribosomal RNA prediction

Install

All systems
curl cmd.cat/barrnap.sh
Debian Debian
apt-get install barrnap
Ubuntu
apt-get install barrnap
image/svg+xml Kali Linux
apt-get install barrnap
Windows (WSL2)
sudo apt-get update sudo apt-get install barrnap
Raspbian
apt-get install barrnap

barrnap

rapid ribosomal RNA prediction

Barrnap (BAsic Rapid Ribosomal RNA Predictor) predicts the location of ribosomal RNA genes in genomes. It supports bacteria (5S,23S,16S), archaea (5S,5.8S,23S,16S), mitochondria (12S,16S) and eukaryotes (5S,5.8S,28S,18S). It takes FASTA DNA sequence as input, and writes GFF3 as output. It uses the NHMMER tool that comes with HMMER 3.1 for HMM searching in RNA:DNA style. Multithreading is supported and one can expect roughly linear speed-ups with more CPUs.