beagle
Genotype calling, genotype phasing and imputation of ungenotyped markers
Install
- All systems
-
curl cmd.cat/beagle.sh
- Debian
-
apt-get install beagle - Ubuntu
-
apt-get install beagle - Kali Linux
-
apt-get install beagle - Windows (WSL2)
-
sudo apt-get updatesudo apt-get install beagle - OS X
-
brew install beagle - Raspbian
-
apt-get install beagle - Dockerfile
- dockerfile.run/beagle
beagle
Genotype calling, genotype phasing and imputation of ungenotyped markers
Beagle performs genotype calling, genotype phasing, imputation of ungenotyped markers, and identity-by-descent segment detection. Genotypic imputation works on phased haplotypes using a Li and Stephens haplotype frequency model. Beagle also implements the Refined IBD algorithm for detecting homozygosity-by-descent (HBD) and identity-by-descent (IBD) segments.