beast-mcmc
Bayesian MCMC phylogenetic inference
Install
- All systems
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curl cmd.cat/beast-mcmc.sh
- Debian
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apt-get install beast-mcmc - Ubuntu
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apt-get install beast-mcmc - Kali Linux
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apt-get install beast-mcmc - Windows (WSL2)
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sudo apt-get updatesudo apt-get install beast-mcmc - Raspbian
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apt-get install beast-mcmc - Dockerfile
- dockerfile.run/beast-mcmc
beast-mcmc
Bayesian MCMC phylogenetic inference
BEAST is a cross-platform program for Bayesian MCMC analysis of molecular sequences. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies but is also a framework for testing evolutionary hypotheses without conditioning on a single tree topology. BEAST uses MCMC to average over tree space, so that each tree is weighted proportional to its posterior probability. Included is a simple to use user-interface program for setting up standard analyses and a suit of programs for analysing the results.