beast-mcmc

Bayesian MCMC phylogenetic inference

Install

All systems
curl cmd.cat/beast-mcmc.sh
Debian Debian
apt-get install beast-mcmc
Ubuntu
apt-get install beast-mcmc
image/svg+xml Kali Linux
apt-get install beast-mcmc
Raspbian
apt-get install beast-mcmc

beast-mcmc

Bayesian MCMC phylogenetic inference

BEAST is a cross-platform program for Bayesian MCMC analysis of molecular sequences. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies but is also a framework for testing evolutionary hypotheses without conditioning on a single tree topology. BEAST uses MCMC to average over tree space, so that each tree is weighted proportional to its posterior probability. Included is a simple to use user-interface program for setting up standard analyses and a suit of programs for analysing the results.