biomaj_migrate_database.py

BioMAJ workflow management library

Install

All systems
curl cmd.cat/biomaj_migrate_database.py.sh
Debian Debian
apt-get install python3-biomaj3
Ubuntu
apt-get install python3-biomaj3
image/svg+xml Kali Linux
apt-get install python3-biomaj3
Windows (WSL2)
sudo apt-get update sudo apt-get install python3-biomaj3
Dockerfile
dockerfile.run/biomaj_migrate_database.py

python3-biomaj3

BioMAJ workflow management library

BioMAJ downloads remote data banks, checks their status and applies transformation workflows, with consistent state, to provide ready-to-use data for biologists and bioinformaticians. For example, it can transform original FASTA files into BLAST indexes. It is very flexible and its post-processing facilities can be extended very easily. BioMAJ3 is a rewrite of BioMAJ v1.x, see online documentation for migration. This package contains the library to manage the workflow update in BioMAJ3, it is managed via python3-biomaj3-daemon (for microservices remote operations) or biomaj3-cli (local or remote) packages