blastp

Protein-Protein BLAST. More information: <https://www.ncbi.nlm.nih.gov/books/NBK279684/table/appendices.T.blastp_application_options/>.

Install

All systems
curl cmd.cat/blastp.sh
Debian Debian
apt-get install ncbi-blast+
Ubuntu
apt-get install ncbi-blast+
image/svg+xml Kali Linux
apt-get install ncbi-blast+
Fedora
dnf install ncbi-blast+
Windows (WSL2)
sudo apt-get update sudo apt-get install ncbi-blast+
Raspbian
apt-get install ncbi-blast+
Dockerfile
dockerfile.run/blastp

Protein-Protein BLAST. More information: <https://www.ncbi.nlm.nih.gov/books/NBK279684/table/appendices.T.blastp_application_options/>.

  • Align two or more sequences using blastp, with the e-value threshold of 1e-9, pairwise output format, output to screen:
    blastp -query query.fa -subject subject.fa -evalue 1e-9
  • Align two or more sequences using blastp-fast:
    blastp -task blastp-fast -query query.fa -subject subject.fa
  • Align two or more sequences, custom tabular output format, output to file:
    blastp -query query.fa -subject subject.fa -outfmt '6 qseqid qlen qstart qend sseqid slen sstart send bitscore evalue pident' -out output.tsv
  • Search protein databases using a protein query, 16 threads to use in the BLAST search, with a maximum number of 10 aligned sequences to keep:
    blastp -query query.fa -db blast_database_name -num_threads 16 -max_target_seqs 10
  • Search the remote non-redundant protein database using a protein query:
    blastp -query query.fa -db nr -remote
  • Display help (use `-help` for detailed help):
    blastp -h

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