boxshade
Pretty-printing of multiple sequence alignments
Install
- All systems
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curl cmd.cat/boxshade.sh
- Debian
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apt-get install boxshade - Ubuntu
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apt-get install boxshade - Kali Linux
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apt-get install boxshade - Windows (WSL2)
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sudo apt-get updatesudo apt-get install boxshade - Raspbian
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apt-get install boxshade - Dockerfile
- dockerfile.run/boxshade
boxshade
Pretty-printing of multiple sequence alignments
Boxshade is a program for creating good looking printouts from multiple-aligned protein or DNA sequences. The program does not perform the alignment by itself and requires as input a file that was created by a multiple alignment program or manually edited with respective tools. Boxshade reads multiple-aligned sequences from either PILEUP-MSF, CLUSTAL-ALN, MALIGNED-data and ESEE-save files (limited to a maximum of 150 sequences with up to 10000 elements each). Various kinds of shading can be applied to identical/similar residues. Output is written to screen or to a file in the following formats: ANSI/VT100, PS/EPS, RTF, HPGL, ReGIS, LJ250-printer, ASCII, xFIG, PICT, HTML