bp_einfo
BioPerl interface to the Entrez Programming Utilities (E-utilities)
Install
- All systems
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curl cmd.cat/bp_einfo.sh
- Debian
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apt-get install libbio-eutilities-perl - Ubuntu
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apt-get install libbio-eutilities-perl - Kali Linux
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apt-get install libbio-eutilities-perl - Windows (WSL2)
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sudo apt-get updatesudo apt-get install libbio-eutilities-perl - Dockerfile
- dockerfile.run/bp_einfo
libbio-eutilities-perl
BioPerl interface to the Entrez Programming Utilities (E-utilities)
The Bioperl project is a coordinated effort to collect computational methods routinely used in bioinformatics into a set of standard CPAN-style, well-documented, and freely available Perl modules. This package provides a programmatic interface to NCBI's Entrez Programming Utilities commonly referred to as E-utilities. Namely, it provides the Bio::DB::EUtilities and Bio::Tools::EUtilities perl modules. Entrez is a federated search engine at the National Center for Biotechnology Information (NCBI) for a large number of databases covering a variety of biomedical data, including nucleotide and protein sequences, gene records, three-dimensional molecular structures, and the biomedical literature. E-utilities are a set of eight server-side programs that provide a stable interface into the Entrez query and database system at the National Center for Biotechnology Information (NCBI).
bioperl
Perl tools for computational molecular biology
The Bioperl project is a coordinated effort to collect computational methods routinely used in bioinformatics into a set of standard CPAN-style, well-documented, and freely available Perl modules. It is well-accepted throughout the community and used in many high-profile projects, e.g., Ensembl. The recommended packages are needed to run some of the included binaries, for a detailed explanation including the specific Perl modules please see README.Debian. The suggested package enhances the manual pages.