bp_genbank_ref_extractor
BioPerl interface to the Entrez Programming Utilities (E-utilities)
Install
- All systems
-
curl cmd.cat/bp_genbank_ref_extractor.sh
- Debian
-
apt-get install libbio-eutilities-perl
- Ubuntu
-
apt-get install libbio-eutilities-perl
- Kali Linux
-
apt-get install libbio-eutilities-perl
- Windows (WSL2)
-
sudo apt-get update
sudo apt-get install libbio-eutilities-perl
- Dockerfile
- dockerfile.run/bp_genbank_ref_extractor
libbio-eutilities-perl
BioPerl interface to the Entrez Programming Utilities (E-utilities)
The Bioperl project is a coordinated effort to collect computational methods routinely used in bioinformatics into a set of standard CPAN-style, well-documented, and freely available Perl modules. This package provides a programmatic interface to NCBI's Entrez Programming Utilities commonly referred to as E-utilities. Namely, it provides the Bio::DB::EUtilities and Bio::Tools::EUtilities perl modules. Entrez is a federated search engine at the National Center for Biotechnology Information (NCBI) for a large number of databases covering a variety of biomedical data, including nucleotide and protein sequences, gene records, three-dimensional molecular structures, and the biomedical literature. E-utilities are a set of eight server-side programs that provide a stable interface into the Entrez query and database system at the National Center for Biotechnology Information (NCBI).