bp_pairwise_kaks
Perl tools for computational molecular biology
Install
- All systems
-
curl cmd.cat/bp_pairwise_kaks.sh
- Debian
-
apt-get install bioperl - Ubuntu
-
apt-get install bioperl - Kali Linux
-
apt-get install libbio-tools-phylo-paml-perl - Windows (WSL2)
-
sudo apt-get updatesudo apt-get install bioperl - Raspbian
-
apt-get install bioperl - Dockerfile
- dockerfile.run/bp_pairwise_kaks
bioperl
Perl tools for computational molecular biology
The Bioperl project is a coordinated effort to collect computational methods routinely used in bioinformatics into a set of standard CPAN-style, well-documented, and freely available Perl modules. It is well-accepted throughout the community and used in many high-profile projects, e.g., Ensembl. The recommended packages are needed to run some of the included binaries, for a detailed explanation including the specific Perl modules please see README.Debian. The suggested package enhances the manual pages.
libbio-tools-phylo-paml-perl
Bioperl interface to the PAML suite
This distribution provides a Perl interface to PAML, a suite of programs (baseml, codeml, evolver, and yn00) for phylogenetic analyses of DNA or protein sequences using maximum likelihood. The Bio::Tools::Run::Phylo::PAML::* modules provide an interface to run the PAML programs while Bio::Tools::Phylo::PAML provides an interface to parse their output files. This distribution is part of the Bioperl project.