bref
Genotype calling, genotype phasing and imputation of ungenotyped markers
Install
- All systems
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curl cmd.cat/bref.sh
- Debian
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apt-get install beagle - Ubuntu
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apt-get install beagle - Kali Linux
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apt-get install beagle - Windows (WSL2)
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sudo apt-get updatesudo apt-get install beagle - OS X
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brew install beagle - Raspbian
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apt-get install beagle - Dockerfile
- dockerfile.run/bref
beagle
Genotype calling, genotype phasing and imputation of ungenotyped markers
Beagle performs genotype calling, genotype phasing, imputation of ungenotyped markers, and identity-by-descent segment detection. Genotypic imputation works on phased haplotypes using a Li and Stephens haplotype frequency model. Beagle also implements the Refined IBD algorithm for detecting homozygosity-by-descent (HBD) and identity-by-descent (IBD) segments.