cassiopee
index and search tool in genomic sequences
Install
- All systems
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curl cmd.cat/cassiopee.sh
- Debian
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apt-get install cassiopee - Ubuntu
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apt-get install cassiopee - Kali Linux
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apt-get install cassiopee - Windows (WSL2)
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sudo apt-get updatesudo apt-get install cassiopee - Raspbian
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apt-get install cassiopee - Dockerfile
- dockerfile.run/cassiopee
cassiopee
index and search tool in genomic sequences
Cassiopee index and search library C implementation. It is a complete rewrite of the ruby Cassiopee gem. It scans an input genomic sequence (dna/rna/protein) and search for a subsequence with exact match or allowing substitutions (Hamming distance) and/or insertion/deletions. This package contains the cassiopee and cassiopeeknife tools.