cassiopeeknife

index and search tool in genomic sequences

Install

All systems
curl cmd.cat/cassiopeeknife.sh
Debian Debian
apt-get install cassiopee
Ubuntu
apt-get install cassiopee
image/svg+xml Kali Linux
apt-get install cassiopee
Windows (WSL2)
sudo apt-get update sudo apt-get install cassiopee
Raspbian
apt-get install cassiopee
Dockerfile
dockerfile.run/cassiopeeknife

cassiopee

index and search tool in genomic sequences

Cassiopee index and search library C implementation. It is a complete rewrite of the ruby Cassiopee gem. It scans an input genomic sequence (dna/rna/protein) and search for a subsequence with exact match or allowing substitutions (Hamming distance) and/or insertion/deletions. This package contains the cassiopee and cassiopeeknife tools.