cassiopeeknife
index and search tool in genomic sequences
Install
- All systems
-
curl cmd.cat/cassiopeeknife.sh
- Debian
-
apt-get install cassiopee
- Ubuntu
-
apt-get install cassiopee
- Kali Linux
-
apt-get install cassiopee
- Windows (WSL2)
-
sudo apt-get update
sudo apt-get install cassiopee
- Raspbian
-
apt-get install cassiopee
- Dockerfile
- dockerfile.run/cassiopeeknife
cassiopee
index and search tool in genomic sequences
Cassiopee index and search library C implementation. It is a complete rewrite of the ruby Cassiopee gem. It scans an input genomic sequence (dna/rna/protein) and search for a subsequence with exact match or allowing substitutions (Hamming distance) and/or insertion/deletions. This package contains the cassiopee and cassiopeeknife tools.