chaos

The European Molecular Biology Open Software Suite

Install

All systems
curl cmd.cat/chaos.sh
Debian Debian
apt-get install EMBOSS
Ubuntu
apt-get install EMBOSS
image/svg+xml Kali Linux
apt-get install EMBOSS
Fedora
dnf install lagan
Windows (WSL2)
sudo apt-get update sudo apt-get install EMBOSS
Raspbian
apt-get install EMBOSS
Dockerfile
dockerfile.run/chaos

EMBOSS

The European Molecular Biology Open Software Suite

lagan

highly parametrizable pairwise global genome sequence aligner

Lagan takes local alignments generated by CHAOS as anchors, and limits the search area of the Needleman-Wunsch algorithm around these anchors. Multi-LAGAN is a generalization of the pairwise algorithm to multiple sequence alignment. M-LAGAN performs progressive pairwise alignments, guided by a user-specified phylogenetic tree. Alignments are aligned to other alignments using the sum-of-pairs metric.