clstr_renumber

suite of programs designed to quickly group sequences

Install

All systems
curl cmd.cat/clstr_renumber.sh
Debian Debian
apt-get install cd-hit
Ubuntu
apt-get install cd-hit
image/svg+xml Kali Linux
apt-get install cd-hit
Windows (WSL2)
sudo apt-get update sudo apt-get install cd-hit
Raspbian
apt-get install cd-hit
Dockerfile
dockerfile.run/clstr_renumber

cd-hit

suite of programs designed to quickly group sequences

cd-hit contains a number of programs designed to quickly group sequences. cd-hit groups proteins into clusters that meet a user-defined similarity threshold. cd-hit-est is similar to cd-hit, but designed to group nucleotide sequences (without introns). cd-hit-est-2d is similar to cd-hit-2d but designed to compare two nucleotide datasets. A number of other related programs are also in this package. Please see the cd-hit user manual, also part of this package, for further information.