cnvkit-reference2targets
Copy number variant detection from targeted DNA sequencing
Install
- All systems
-
curl cmd.cat/cnvkit-reference2targets.sh
- Debian
-
apt-get install cnvkit
- Ubuntu
-
apt-get install cnvkit
- Kali Linux
-
apt-get install cnvkit
- Windows (WSL2)
-
sudo apt-get update
sudo apt-get install cnvkit
- Dockerfile
- dockerfile.run/cnvkit-reference2targets
cnvkit
Copy number variant detection from targeted DNA sequencing
A command-line toolkit and Python library for detecting copy number variants and alterations genome-wide from targeted DNA sequencing. It is designed for use with hybrid capture, including both whole-exome and custom target panels, and short-read sequencing platforms such as Illumina and Ion Torrent.