codonw-bases

Correspondence Analysis of Codon Usage

Install

All systems
curl cmd.cat/codonw-bases.sh
Debian Debian
apt-get install codonw
Ubuntu
apt-get install codonw
image/svg+xml Kali Linux
apt-get install codonw
Windows (WSL2)
sudo apt-get update sudo apt-get install codonw
Raspbian
apt-get install codonw
Dockerfile
dockerfile.run/codonw-bases

codonw

Correspondence Analysis of Codon Usage

CodonW is a package for codon usage analysis. It was designed to simplify Multivariate Analysis (MVA) of codon usage. The MVA method employed in CodonW is correspondence analysis (COA) (the most popular MVA method for codon usage analysis). CodonW can generate a COA for codon usage, relative synonymous codon usage or amino acid usage. Additional analyses of codon usage include investigation of optimal codons, codon and dinucleotide bias, and/or base composition. CodonW analyses sequences encoded by genetic codes other than the universal code.