contig_to_chr_coords

fast splice junction mapper for RNA-Seq reads

Install

All systems
curl cmd.cat/contig_to_chr_coords.sh
Debian Debian
apt-get install tophat
Ubuntu
apt-get install tophat
image/svg+xml Kali Linux
apt-get install tophat
Windows (WSL2)
sudo apt-get update sudo apt-get install tophat
Raspbian
apt-get install tophat

tophat

fast splice junction mapper for RNA-Seq reads

TopHat aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons. TopHat is a collaborative effort between the University of Maryland Center for Bioinformatics and Computational Biology and the University of California, Berkeley Departments of Mathematics and Molecular and Cell Biology.