cram_filter

programs for manipulating DNA sequencing files

Install

All systems
curl cmd.cat/cram_filter.sh
Debian Debian
apt-get install staden-io-lib-utils
Ubuntu
apt-get install staden-io-lib-utils
image/svg+xml Kali Linux
apt-get install staden-io-lib-utils
Windows (WSL2)
sudo apt-get update sudo apt-get install staden-io-lib-utils
Raspbian
apt-get install staden-io-lib-utils

staden-io-lib-utils

programs for manipulating DNA sequencing files

The io_lib from the Staden package is a library of file reading and writing code to provide a general purpose trace file (and Experiment File) reading interface. It has been compiled and tested on a variety of unix systems, MacOS X and MS Windows. This package contains the programs that are distributed with the Staden io_lib for manipulating and converting sequencing data files, and in particular files to maniuplate short reads generated by second and third generation sequencers and stored in SRF format.