cuffcompare
Transcript assembly, differential expression and regulation for RNA-Seq
Install
- All systems
-
curl cmd.cat/cuffcompare.sh
- Ubuntu
-
apt-get install cufflinks - Kali Linux
-
apt-get install cufflinks - Windows (WSL2)
-
sudo apt-get updatesudo apt-get install cufflinks - Dockerfile
- dockerfile.run/cuffcompare
cufflinks
Transcript assembly, differential expression and regulation for RNA-Seq
Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles the alignments into a parsimonious set of transcripts. Cufflinks then estimates the relative abundances of these transcripts based on how many reads support each one.