cuffcompare

Transcript assembly, differential expression and regulation for RNA-Seq

Install

All systems
curl cmd.cat/cuffcompare.sh
Ubuntu
apt-get install cufflinks
image/svg+xml Kali Linux
apt-get install cufflinks
Windows (WSL2)
sudo apt-get update sudo apt-get install cufflinks
Dockerfile
dockerfile.run/cuffcompare

cufflinks

Transcript assembly, differential expression and regulation for RNA-Seq

Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles the alignments into a parsimonious set of transcripts. Cufflinks then estimates the relative abundances of these transcripts based on how many reads support each one.