cut-range

Bayesian Inference of Alignment and Phylogeny

Install

All systems
curl cmd.cat/cut-range.sh
Debian Debian
apt-get install bali-phy
Ubuntu
apt-get install bali-phy
image/svg+xml Kali Linux
apt-get install bali-phy
Windows (WSL2)
sudo apt-get update sudo apt-get install bali-phy
Dockerfile
dockerfile.run/cut-range

bali-phy

Bayesian Inference of Alignment and Phylogeny

BAli-Phy estimates multiple sequence alignments and evolutionary trees from unaligned DNA, amino acid, or codon sequences. BAli-Phy uses MCMC to estimate evolutionary trees, positive selection, and branch lengths while averaging over alternative alignments. BAli-Phy can display alignment ambiguity graphically in an alignment uncertainty (AU) plot. BAli-Phy can also estimate phylogenies from a fixed alignment (like MrBayes and BEAST) using substitution models like GTR+gamma. BAli-Phy automatically estimates relative rates for each gene.