cutadapt3
Clean biological sequences from high-throughput sequencing reads (Python 3)
Install
- All systems
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curl cmd.cat/cutadapt3.sh
- Debian
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apt-get install python3-cutadapt - Ubuntu
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apt-get install python3-cutadapt - Kali Linux
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apt-get install python3-cutadapt - Windows (WSL2)
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sudo apt-get updatesudo apt-get install python3-cutadapt - Raspbian
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apt-get install python3-cutadapt - Dockerfile
- dockerfile.run/cutadapt3
python3-cutadapt
Clean biological sequences from high-throughput sequencing reads (Python 3)
Cutadapt helps with biological sequence clean tasks by finding the adapter or primer sequences in an error-tolerant way. It can also modify and filter reads in various ways. Adapter sequences can contain IUPAC wildcard characters. Also, paired-end reads and even colorspace data is supported. If you want, you can also just demultiplex your input data, without removing adapter sequences at all. This package contains the Python 3 module.