deepnano_basecall

alternative basecaller for MinION reads of genomic sequences

Install

All systems
curl cmd.cat/deepnano_basecall.sh
Debian Debian
apt-get install deepnano
Ubuntu
apt-get install deepnano
image/svg+xml Kali Linux
apt-get install deepnano
Windows (WSL2)
sudo apt-get update sudo apt-get install deepnano
Dockerfile
dockerfile.run/deepnano_basecall

deepnano

alternative basecaller for MinION reads of genomic sequences

DeepNano is alternative basecaller for Oxford Nanopore MinION reads based on deep recurrent neural networks. Currently it works with SQK-MAP-006 and SQK-MAP-005 chemistry and as a postprocessor for Metrichor.