dipspades

genome assembler for single-cell and isolates data sets

Install

All systems
curl cmd.cat/dipspades.sh
Debian Debian
apt-get install spades
Ubuntu
apt-get install spades
image/svg+xml Kali Linux
apt-get install spades
Windows (WSL2)
sudo apt-get update sudo apt-get install spades
OS X
brew install spades
Dockerfile
dockerfile.run/dipspades

spades

genome assembler for single-cell and isolates data sets

The SPAdes – St. Petersburg genome assembler is intended for both standard isolates and single-cell MDA bacteria assemblies. It works with Illumina or IonTorrent reads and is capable of providing hybrid assemblies using PacBio and Sanger reads. You can also provide additional contigs that will be used as long reads.