discoSnp_to_genotypes
discovering Single Nucleotide Polymorphism from raw set(s) of reads
Install
- All systems
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curl cmd.cat/discoSnp_to_genotypes.sh
- Debian
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apt-get install discosnp - Ubuntu
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apt-get install discosnp - Kali Linux
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apt-get install discosnp - Windows (WSL2)
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sudo apt-get updatesudo apt-get install discosnp - Raspbian
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apt-get install discosnp - Dockerfile
- dockerfile.run/discoSnp_to_genotypes
discosnp
discovering Single Nucleotide Polymorphism from raw set(s) of reads
Software discoSnp is designed for discovering Single Nucleotide Polymorphism (SNP) from raw set(s) of reads obtained with Next Generation Sequencers (NGS). Note that number of input read sets is not constrained, it can be one, two, or more. Note also that no other data as reference genome or annotations are needed. The software is composed by two modules. First module, kissnp2, detects SNPs from read sets. A second module, kissreads, enhance the kissnp2 results by computing per read set and for each found SNP: 1) its mean read coverage 2) the (phred) quality of reads generating the polymorphism. This program is superseded by DiscoSnp++.