e-smile_shuffling
Find statistically significant patterns in sequences
Install
- All systems
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curl cmd.cat/e-smile_shuffling.sh
- Debian
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apt-get install mlv-smile - Ubuntu
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apt-get install mlv-smile - Kali Linux
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apt-get install mlv-smile - Windows (WSL2)
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sudo apt-get updatesudo apt-get install mlv-smile - Raspbian
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apt-get install mlv-smile - Dockerfile
- dockerfile.run/e-smile_shuffling
mlv-smile
Find statistically significant patterns in sequences
Smile determines sequence motifs on the basis of a set of DNA, RNA or protein sequences. * No hard limit on the number of combinations of motifs to describe subsets of sequences. * The sequence alphabet may be specified. * The use of wildcards is supported. * Better determination of significance of motifs by simulation. * Introduction of a set of sequences with negative controls that should not match automatically determined motifs.