elph
DNA/protein sequence motif finder
Install
- All systems
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curl cmd.cat/elph.sh
- Debian
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apt-get install elph - Ubuntu
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apt-get install elph - Kali Linux
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apt-get install elph - Fedora
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dnf install elph - Windows (WSL2)
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sudo apt-get updatesudo apt-get install elph - Dockerfile
- dockerfile.run/elph
elph
DNA/protein sequence motif finder
ELPH (Estimated Locations of Pattern Hits) is a general-purpose Gibbs sampler for finding motifs in a set of DNA or protein sequences. The program takes as input a set containing anywhere from a few dozen to thousands of sequences, and searches through them for the most common motif, assuming that each sequence contains one copy of the motif. We have used ELPH to find patterns such as ribosome binding sites (RBSs) and exon splicing enhancers (ESEs).