estimateExpression

Bayesian Inference of Transcripts from Sequencing Data

Install

All systems
curl cmd.cat/estimateExpression.sh
Debian Debian
apt-get install bitseq
Ubuntu
apt-get install bitseq
image/svg+xml Kali Linux
apt-get install bitseq
Windows (WSL2)
sudo apt-get update sudo apt-get install bitseq
Dockerfile
dockerfile.run/estimateExpression

bitseq

Bayesian Inference of Transcripts from Sequencing Data

BitSeq is an application for inferring expression levels of individual transcripts from sequencing (RNA-Seq) data and estimating differential expression (DE) between conditions. An advantage of this approach is the ability to account for both technical uncertainty and intrinsic biological variance in order to avoid false DE calls. The technical contribution to the uncertainty comes both from finite read-depth and the possibly ambiguous mapping of reads to multiple transcripts.