extractUnmappedSubreads
map Pacific Biosciences reads to reference DNA sequences
Install
- All systems
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curl cmd.cat/extractUnmappedSubreads.sh
- Debian
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apt-get install pbalign - Ubuntu
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apt-get install pbalign - Windows (WSL2)
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sudo apt-get updatesudo apt-get install pbalign - Raspbian
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apt-get install pbalign - Dockerfile
- dockerfile.run/extractUnmappedSubreads
pbalign
map Pacific Biosciences reads to reference DNA sequences
pbalign aligns PacBio reads to reference sequences, filters aligned reads according to user-specific filtering criteria, and converts the output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5) format. This package is part of the SMRTAnalysis suite.